ThermoRawReader
Class capable of reading spectra from Thermo Fisher Scientific raw formatted data files.
Remarks
Reads mass spectra stored in the proprietary Thermo Fisher Scientific raw format. Requires linking Nova to the MSFileReader.
Implements
ISpectrumFileReader
Constructors
| Syntax | Description |
|---|---|
| ThermoRawReader(MSFilter filter) | Initializes the ThermoRawReader class and sets a spectrum filter. |
Properties
| Identifier | Type | Description |
|---|---|---|
| FirstScanNumber | int | Number of the first scan event in the file. |
| LastScanNumber | int | Number of the last scan event in the file. |
| MaxRetentionTime | double | Retention time (in minutes) of the last scan event in the file. |
| ScanCount | int | Total number of scan events in the file. |
Methods
| Method | Returns | Description |
|---|---|---|
| Close() | void | Closes an open MS data file. |
| GetSpectrum(int scanNumber = -1, bool centroid = true) | Spectrum | Reads the requested spectrum or the next spectrum if a valid scanNumber is not given. Data are returned in centroid, if possible, unless otherwise requested. |
| GetSpectrumEx(int scanNumber = -1, bool centroid = true) | SpectrumEx | Reads the requested spectrum or the next spectrum if a valid scanNumber is not given, and returns the data in the extended spectrum format. Data are returned in centroid, if possible, unless otherwise requested. |
| Open(string fileName) | bool | Opens an mzML file and parses the index and meta information. |
| GetSpectrum(int scanNumber = -1, bool centroid = true) | Spectrum | Reads the requested spectrum or the next spectrum if a valid scanNumber is not given. Data are returned in centroid, if possible, unless otherwise requested. |
Example
1
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