Chapter 6 Literature
Background literature for the lab can be found in the “Getting Started” Google Drive folder. You will be given access to this upon joining. If you need access, ask Devin about this.
Below find links to papers that may be of interest to explore new topics or get caught up on where the lab is now.
6.1 Getting started
When just starting off in the lab, I encourage you to read the papers below and to check out resources such as the NCQBCS Mass Spec Summer School videos: https://www.ncqbcs.com/resources/training/summer-school/ https://www.youtube.com/channel/UC0v4sjdXLMa-OWR7IYeoFoA
6.2 Proteomics
The abc’s (and xyz’s) of peptide sequencing, Nature Reviews Molecular Cell Biology, 2004
The emerging landscape of single-molecule protein sequencing technologies, Nature Methods, 2021
Theoretical Considerations for Next-Generation Proteomics, JPR, 2021
Reversed-Phase Liquid Chromatography of Peptides for Bottom-Up Proteomics: A Tutorial, JPR, 2022
An Introduction to Mass Spectrometry-Based Proteomics, JPR, 2023
6.3 Multiplex quantitation
Defining the carrier proteome limit for single-cell proteomics, Nature Methods, 2021
A Review on Quantitative Multiplexed Proteomics, ChemBioChem, 2019
6.4 Proteome data analysis
Philosopher: a versatile toolkit for shotgun proteomics data analysis, Nature Methods, 2020
Comet: an open-source MS/MS sequence database search tool, Proteomics, 2013